species:   Drmel
pid:       MI0017746
parent:    dme-mir-4960
paralog:   
locus:     NC_004354.4:569903-570003
matures:   ['CUGGGACCUUGGGCUUACGGU', 'CGCAAGCCCAGAAGUCCGGCAGUC']
srr:       SRR11906542
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram NC_004354.4:569903-570003

0 out of bounds
15 alignments
15 proper strand
12 stranded perfect matches

                      **************************             ***********************                 
ACACAAGGCCUGCCGCCCAAGAAACGCAAGCCCAGAAGUCCGGCAGUCGAGAAUCACGAGGGACUGGGACCUUGGGCUUACGGUUCUCAGUUUGGCUUGAC
.....(((((....((...(((..((.((((((((..((((..(((((.............))))))))).)))))))).))..)))..))..)))))...
---------------------------------------------------------------CUGGGACCUUGGGCUUACGGU----------------- l=21 a=7 c
------------------------CGCAAGCCCAGAAGUCCGGCAGUC----------------------------------------------------- l=24 a=0 c*
---------------------------------------------------------------CUGGGACCUUGGGCUUACGGU----------------- l=21 a=7 ma
------------------------CGCAAGCCCAGAAGUCCGGCAGUC----------------------------------------------------- l=24 a=0 ma*

------------------------CGCAAGCCCAGAAGUCCGGCAGUCG---------------------------------------------------- l=25 a=1 
--------------------------------------UCCGGCAGUCGAGAAUCACG------------------------------------------- l=20 a=1 
---------------------------------------------------------------CUGGGACCUUGGGCUUACGG------------------ l=20 a=2 
---------------------------------------------------------------CUGGGACCUUGGGCUUACGGU----------------- l=21 a=7 (c,ma)
---------------------------------------------------------------CUGGGACCUUGGGCUUgCGGU----------------- l=21 a=2 
---------------------------------------------------------------CUGGGACCUUGGGCUUAuGGU----------------- l=21 a=1 
----------------------------------------------------------------UGGGACCUUGGGCUUACGGUU---------------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-111111101110
fn-011
